Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | TsdAT/- |
Location | 809041..809551 | Replicon | chromosome |
Accession | NZ_LR134244 | ||
Organism | Staphylococcus warneri strain NCTC7291 |
Toxin (Protein)
Gene name | TsdT | Uniprot ID | A0A364UNH7 |
Locus tag | EL075_RS03895 | Protein ID | WP_002466743.1 |
Coordinates | 809345..809551 (+) | Length | 69 a.a. |
Antitoxin (Protein)
Gene name | TsdA | Uniprot ID | A0A364UNN3 |
Locus tag | EL075_RS03890 | Protein ID | WP_002466760.1 |
Coordinates | 809041..809334 (+) | Length | 98 a.a. |
Genomic Context
Location: 804167..804958 (792 bp)
Type: Others
Protein ID: WP_126403124.1
Type: Others
Protein ID: WP_126403124.1
Location: 804959..805600 (642 bp)
Type: Others
Protein ID: WP_015364827.1
Type: Others
Protein ID: WP_015364827.1
Location: 805689..806558 (870 bp)
Type: Others
Protein ID: WP_002466746.1
Type: Others
Protein ID: WP_002466746.1
Location: 809041..809334 (294 bp)
Type: Antitoxin
Protein ID: WP_002466760.1
Type: Antitoxin
Protein ID: WP_002466760.1
Location: 809345..809551 (207 bp)
Type: Toxin
Protein ID: WP_002466743.1
Type: Toxin
Protein ID: WP_002466743.1
Location: 809690..809827 (138 bp)
Type: Others
Protein ID: WP_002466770.1
Type: Others
Protein ID: WP_002466770.1
Location: 811515..812585 (1071 bp)
Type: Others
Protein ID: WP_002466764.1
Type: Others
Protein ID: WP_002466764.1
Location: 812601..813962 (1362 bp)
Type: Others
Protein ID: WP_002466757.1
Type: Others
Protein ID: WP_002466757.1
Location: 806596..807240 (645 bp)
Type: Others
Protein ID: WP_002466781.1
Type: Others
Protein ID: WP_002466781.1
Location: 807368..808852 (1485 bp)
Type: Others
Protein ID: WP_002466786.1
Type: Others
Protein ID: WP_002466786.1
Location: 809967..811157 (1191 bp)
Type: Others
Protein ID: WP_002466775.1
Type: Others
Protein ID: WP_002466775.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EL075_RS03865 | 804167..804958 | + | 792 | WP_126403124.1 | hydroxyethylthiazole kinase | - |
EL075_RS03870 | 804959..805600 | + | 642 | WP_015364827.1 | thiamine phosphate synthase | - |
EL075_RS03875 | 805689..806558 | + | 870 | WP_002466746.1 | membrane protein insertase YidC | - |
EL075_RS03880 | 806596..807240 | - | 645 | WP_002466781.1 | HD domain-containing protein | - |
EL075_RS03885 | 807368..808852 | - | 1485 | WP_002466786.1 | cardiolipin synthase | - |
EL075_RS03890 | 809041..809334 | + | 294 | WP_002466760.1 | copper-sensing transcriptional repressor CsoR | Antitoxin |
EL075_RS03895 | 809345..809551 | + | 207 | WP_002466743.1 | heavy-metal-associated domain-containing protein | Toxin |
EL075_RS03900 | 809690..809827 | + | 138 | WP_002466770.1 | hypothetical protein | - |
EL075_RS03905 | 809967..811157 | - | 1191 | WP_002466775.1 | rod shape-determining protein RodA | - |
EL075_RS03910 | 811515..812585 | + | 1071 | WP_002466764.1 | D-alanine--D-alanine ligase | - |
EL075_RS03915 | 812601..813962 | + | 1362 | WP_002466757.1 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Structures
Toxin
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Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A364UNH7 |
Antitoxin
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Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A364UNN3 |