Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1988248..1988519 | Replicon | chromosome |
| Accession | NZ_LR134240 | ||
| Organism | Escherichia coli strain NCTC9107 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1988378..1988481 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1988248..1988519 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL129_RS09620 | 1984803..1985465 | - | 663 | WP_001556661.1 | exodeoxyribonuclease X | - |
| EL129_RS09625 | 1985489..1986145 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL129_RS09630 | 1986247..1986477 | - | 231 | WP_074562762.1 | DNA polymerase III subunit theta | - |
| EL129_RS09635 | 1986616..1986990 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL129_RS09640 | 1986994..1987866 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EL129_RS09645 | 1987879..1988220 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1988248..1988519 | - | 272 | - | - | Antitoxin |
| - | 1988378..1988481 | + | 104 | - | - | Toxin |
| EL129_RS09650 | 1988616..1989272 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| EL129_RS09655 | 1989273..1989464 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EL129_RS09660 | 1989569..1989805 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| EL129_RS09665 | 1989923..1991362 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287330 NZ_LR134240:1988378-1988481 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287330 NZ_LR134240:c1988519-1988248 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
