Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4584723..4584867 | Replicon | chromosome |
| Accession | NZ_LR134235 | ||
| Organism | Klebsiella variicola strain NCTC9668 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4584759..4584861 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4584723..4584867 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL159_RS22675 | 4579852..4581913 | + | 2062 | Protein_4276 | oligopeptidase B | - |
| EL159_RS22680 | 4581917..4582576 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| EL159_RS22685 | 4582655..4582885 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| EL159_RS22690 | 4582999..4583373 | + | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| EL159_RS22695 | 4583377..4584246 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| EL159_RS22700 | 4584263..4584601 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 4584723..4584867 | - | 145 | - | - | Antitoxin |
| - | 4584759..4584861 | + | 103 | - | - | Toxin |
| EL159_RS28650 | 4585246..4585389 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| EL159_RS22710 | 4585493..4586461 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| EL159_RS22715 | 4586617..4587270 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| EL159_RS22720 | 4587267..4587458 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EL159_RS22725 | 4587556..4587795 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EL159_RS22730 | 4587911..4589344 | - | 1434 | WP_110209367.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T287255 NZ_LR134235:4584759-4584861 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT287255 NZ_LR134235:c4584867-4584723 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
