Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4460080..4460698 Replicon chromosome
Accession NZ_LR134234
Organism Escherichia coli strain NCTC8623

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag EL131_RS21745 Protein ID WP_001291435.1
Coordinates 4460080..4460298 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag EL131_RS21750 Protein ID WP_000344800.1
Coordinates 4460324..4460698 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL131_RS21710 4455369..4455941 + 573 WP_000779826.1 lipoprotein -
EL131_RS21715 4455972..4456283 - 312 WP_000409911.1 MGMT family protein -
EL131_RS21725 4456662..4457015 + 354 WP_000878141.1 DUF1428 family protein -
EL131_RS21730 4457057..4458607 - 1551 WP_001299455.1 cyclic-guanylate-specific phosphodiesterase PdeB -
EL131_RS21735 4458771..4459241 - 471 WP_000136192.1 YlaC family protein -
EL131_RS21740 4459357..4459908 - 552 WP_000102564.1 maltose O-acetyltransferase -
EL131_RS21745 4460080..4460298 - 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
EL131_RS21750 4460324..4460698 - 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
EL131_RS21755 4461244..4464393 - 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
EL131_RS21760 4464416..4465609 - 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T287246 WP_001291435.1 NZ_LR134234:c4460298-4460080 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT287246 WP_000344800.1 NZ_LR134234:c4460698-4460324 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References