Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 3690799..3691296 Replicon chromosome
Accession NZ_LR134234
Organism Escherichia coli strain NCTC8623

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag EL131_RS18130 Protein ID WP_001173343.1
Coordinates 3691123..3691296 (+) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag EL131_RS18125 Protein ID WP_000398619.1
Coordinates 3690799..3691095 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL131_RS18105 3687530..3688249 - 720 WP_000611288.1 two-component system response regulator DcuR -
EL131_RS18110 3688246..3689877 - 1632 WP_001216486.1 sensor histidine kinase -
EL131_RS18115 3690058..3690288 + 231 WP_000371700.1 (4Fe-4S)-binding protein -
EL131_RS18120 3690300..3690572 + 273 WP_000405647.1 N-acetyltransferase -
EL131_RS18125 3690799..3691095 + 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
EL131_RS18130 3691123..3691296 + 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
EL131_RS18135 3691415..3692932 - 1518 WP_001295074.1 lysine--tRNA ligase -
EL131_RS18140 3693169..3694626 - 1458 WP_000856834.1 dipeptide/tripeptide permease DtpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T287242 WP_001173343.1 NZ_LR134234:3691123-3691296 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT287242 WP_000398619.1 NZ_LR134234:3690799-3691095 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References