Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1059091..1059362 | Replicon | chromosome |
| Accession | NZ_LR134234 | ||
| Organism | Escherichia coli strain NCTC8623 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1059129..1059232 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1059091..1059362 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL131_RS05220 | 1056248..1057687 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EL131_RS05225 | 1057805..1058041 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL131_RS05230 | 1058146..1058337 | + | 192 | WP_000457842.1 | YebW family protein | - |
| EL131_RS05235 | 1058338..1058994 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 1059091..1059362 | + | 272 | - | - | Antitoxin |
| - | 1059129..1059232 | - | 104 | - | - | Toxin |
| EL131_RS05240 | 1059390..1059731 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EL131_RS05245 | 1059744..1060616 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| EL131_RS05250 | 1060620..1060994 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EL131_RS05255 | 1061133..1061363 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL131_RS05260 | 1061465..1062121 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL131_RS05265 | 1062145..1062807 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287232 NZ_LR134234:c1059232-1059129 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287232 NZ_LR134234:1059091-1059362 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
