Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2087884..2088155 | Replicon | chromosome |
| Accession | NZ_LR134228 | ||
| Organism | Escherichia coli strain NCTC9699 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2088014..2088117 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2087884..2088155 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL118_RS10070 | 2084439..2085101 | - | 663 | WP_126509197.1 | exodeoxyribonuclease X | - |
| EL118_RS10075 | 2085125..2085781 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL118_RS10080 | 2085883..2086113 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL118_RS10085 | 2086252..2086626 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL118_RS10090 | 2086630..2087502 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EL118_RS10095 | 2087515..2087856 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2087884..2088155 | - | 272 | - | - | Antitoxin |
| - | 2088014..2088117 | + | 104 | - | - | Toxin |
| EL118_RS10100 | 2088252..2088908 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| EL118_RS10105 | 2088909..2089100 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EL118_RS10110 | 2089205..2089441 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| EL118_RS10115 | 2089559..2090998 | - | 1440 | WP_126509198.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287195 NZ_LR134228:2088014-2088117 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287195 NZ_LR134228:c2088155-2087884 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
