Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1956142..1956413 | Replicon | chromosome |
| Accession | NZ_LR134226 | ||
| Organism | Escherichia coli strain NCTC9088 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1956272..1956375 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1956142..1956413 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL094_RS09545 | 1952697..1953359 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL094_RS09550 | 1953383..1954039 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL094_RS09555 | 1954141..1954371 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL094_RS09560 | 1954510..1954884 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL094_RS09565 | 1954888..1955760 | + | 873 | WP_000879273.1 | copper homeostasis membrane protein CopD | - |
| EL094_RS09570 | 1955773..1956114 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1956142..1956413 | - | 272 | - | - | Antitoxin |
| - | 1956272..1956375 | + | 104 | - | - | Toxin |
| EL094_RS09575 | 1956510..1957166 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EL094_RS09580 | 1957167..1957358 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EL094_RS09585 | 1957463..1957699 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL094_RS09590 | 1957817..1959256 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287152 NZ_LR134226:1956272-1956375 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287152 NZ_LR134226:c1956413-1956142 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
