Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2021568..2021839 | Replicon | chromosome |
| Accession | NZ_LR134220 | ||
| Organism | Escherichia coli strain NCTC11121 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2021698..2021801 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2021568..2021839 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL088_RS09845 | 2018123..2018785 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| EL088_RS09850 | 2018809..2019465 | - | 657 | WP_073544597.1 | carbon-nitrogen hydrolase family protein | - |
| EL088_RS09855 | 2019567..2019797 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL088_RS09860 | 2019936..2020310 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL088_RS09865 | 2020314..2021186 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EL088_RS09870 | 2021199..2021540 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2021568..2021839 | - | 272 | - | - | Antitoxin |
| - | 2021698..2021801 | + | 104 | - | - | Toxin |
| EL088_RS09875 | 2021936..2022592 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| EL088_RS09880 | 2022593..2022784 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EL088_RS09885 | 2022889..2023125 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| EL088_RS09890 | 2023243..2024682 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287112 NZ_LR134220:2021698-2021801 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287112 NZ_LR134220:c2021839-2021568 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
