Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4175706..4176203 Replicon chromosome
Accession NZ_LR134216
Organism Escherichia coli strain NCTC10973

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag EL103_RS20320 Protein ID WP_001173343.1
Coordinates 4175706..4175879 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag EL103_RS20325 Protein ID WP_000398619.1
Coordinates 4175907..4176203 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL103_RS20310 4172376..4173833 + 1458 WP_000856829.1 dipeptide/tripeptide permease DtpC -
EL103_RS20315 4174070..4175587 + 1518 WP_001295074.1 lysine--tRNA ligase -
EL103_RS20320 4175706..4175879 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
EL103_RS20325 4175907..4176203 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
EL103_RS20330 4176430..4176702 - 273 WP_000405651.1 N-acetyltransferase -
EL103_RS20335 4176714..4176944 - 231 WP_000371704.1 (4Fe-4S)-binding protein -
EL103_RS20345 4178571..4180202 + 1632 WP_001216477.1 sensor histidine kinase -
EL103_RS20350 4180199..4180918 + 720 WP_000611288.1 two-component system response regulator DcuR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T287104 WP_001173343.1 NZ_LR134216:c4175879-4175706 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT287104 WP_000398619.1 NZ_LR134216:c4176203-4175907 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References