Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 2404369..2405007 Replicon chromosome
Accession NZ_LR134216
Organism Escherichia coli strain NCTC10973

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag EL103_RS11700 Protein ID WP_000813794.1
Coordinates 2404831..2405007 (-) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag EL103_RS11695 Protein ID WP_001270286.1
Coordinates 2404369..2404785 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL103_RS11675 2399521..2400462 - 942 WP_001251304.1 ABC transporter permease -
EL103_RS11680 2400463..2401476 - 1014 WP_000220396.1 ABC transporter ATP-binding protein -
EL103_RS11685 2401494..2402639 - 1146 WP_000047424.1 ABC transporter substrate-binding protein -
EL103_RS11690 2402884..2404290 - 1407 WP_000760626.1 PLP-dependent aminotransferase family protein -
EL103_RS11695 2404369..2404785 - 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
EL103_RS11700 2404831..2405007 - 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
EL103_RS11705 2405229..2405459 + 231 WP_000494244.1 YncJ family protein -
EL103_RS11710 2405551..2407512 - 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
EL103_RS11715 2407585..2408121 - 537 WP_000429155.1 DNA-binding transcriptional regulator SutR -
EL103_RS11720 2408174..2409388 + 1215 WP_001326689.1 BenE family transporter YdcO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T287098 WP_000813794.1 NZ_LR134216:c2405007-2404831 [Escherichia coli]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT287098 WP_001270286.1 NZ_LR134216:c2404785-2404369 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References