Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1985378..1985649 | Replicon | chromosome |
| Accession | NZ_LR134216 | ||
| Organism | Escherichia coli strain NCTC10973 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1985508..1985611 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1985378..1985649 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL103_RS09580 | 1981933..1982595 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL103_RS09585 | 1982619..1983275 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL103_RS09590 | 1983377..1983607 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL103_RS09595 | 1983746..1984120 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL103_RS09600 | 1984124..1984996 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| EL103_RS09605 | 1985009..1985350 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1985378..1985649 | - | 272 | - | - | Antitoxin |
| - | 1985508..1985611 | + | 104 | - | - | Toxin |
| EL103_RS09610 | 1985746..1986402 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EL103_RS09615 | 1986403..1986594 | - | 192 | WP_000457842.1 | YebW family protein | - |
| EL103_RS09620 | 1986699..1986935 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL103_RS09625 | 1987053..1988492 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287092 NZ_LR134216:1985508-1985611 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287092 NZ_LR134216:c1985649-1985378 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
