Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1796621..1796762 | Replicon | chromosome |
| Accession | NZ_LR134215 | ||
| Organism | Shimwellia blattae strain NCTC12127 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1796624..1796727 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1796621..1796762 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL083_RS08475 | 1791920..1793356 | + | 1437 | Protein_1623 | VENN motif pre-toxin domain-containing protein | - |
| EL083_RS19980 | 1794524..1794736 | + | 213 | WP_014715981.1 | hypothetical protein | - |
| EL083_RS08490 | 1795120..1795884 | - | 765 | WP_002445008.1 | hypothetical protein | - |
| EL083_RS08495 | 1796017..1796328 | - | 312 | WP_002445010.1 | hypothetical protein | - |
| - | 1796621..1796762 | + | 142 | - | - | Antitoxin |
| - | 1796624..1796727 | - | 104 | - | - | Toxin |
| EL083_RS08500 | 1796870..1797211 | - | 342 | WP_002445011.1 | YebY family protein | - |
| EL083_RS08505 | 1797233..1798105 | - | 873 | WP_002445013.1 | copper homeostasis membrane protein CopD | - |
| EL083_RS08510 | 1798112..1798492 | - | 381 | WP_002445015.1 | copper homeostasis periplasmic binding protein CopC | - |
| EL083_RS08515 | 1798928..1799323 | + | 396 | WP_002445017.1 | DUF937 domain-containing protein | - |
| EL083_RS08520 | 1799385..1799723 | + | 339 | WP_002445019.1 | hypothetical protein | - |
| EL083_RS08525 | 1799842..1800330 | + | 489 | WP_002445021.1 | serine protease inhibitor ecotin | - |
| EL083_RS08535 | 1800592..1801524 | - | 933 | WP_002445023.1 | ABC transporter substrate-binding protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287078 NZ_LR134215:c1796727-1796624 [Shimwellia blattae]
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 142 bp
>AT287078 NZ_LR134215:1796621-1796762 [Shimwellia blattae]
GACAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTCGCCCTGCCATTTAAGAATAGATGAGCATTTCAGCTTTTCCAGT
GACAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTCGCCCTGCCATTTAAGAATAGATGAGCATTTCAGCTTTTCCAGT
