Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1951705..1951848 | Replicon | chromosome |
| Accession | NZ_LR134214 | ||
| Organism | Citrobacter portucalensis strain NCTC11104 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1951740..1951843 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1951705..1951848 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL073_RS09635 | 1948152..1948814 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| EL073_RS09640 | 1948838..1949494 | - | 657 | WP_003833801.1 | carbon-nitrogen hydrolase family protein | - |
| EL073_RS09645 | 1949601..1949831 | - | 231 | WP_003833800.1 | DNA polymerase III subunit theta | - |
| EL073_RS09650 | 1949975..1950349 | + | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| EL073_RS09655 | 1950353..1951225 | + | 873 | WP_008785042.1 | copper homeostasis membrane protein CopD | - |
| EL073_RS09660 | 1951246..1951584 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 1951705..1951848 | - | 144 | - | - | Antitoxin |
| - | 1951740..1951843 | + | 104 | - | - | Toxin |
| EL073_RS09665 | 1951921..1953006 | - | 1086 | WP_065944794.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| EL073_RS09670 | 1952975..1953247 | - | 273 | WP_126317831.1 | excisionase | - |
| EL073_RS09675 | 1953312..1953554 | - | 243 | WP_047415379.1 | DUF4060 family protein | - |
| EL073_RS09680 | 1953594..1954634 | - | 1041 | WP_126317832.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1946083..2000721 | 54638 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287061 NZ_LR134214:1951740-1951843 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT287061 NZ_LR134214:c1951848-1951705 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
