287060

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 825018..825672 Replicon chromosome
Accession NZ_LR134214
Organism Citrobacter portucalensis strain NCTC11104

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag EL073_RS04170 Protein ID WP_003825515.1
Coordinates 825265..825672 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag EL073_RS04165 Protein ID WP_003825514.1
Coordinates 825018..825284 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL073_RS04135 820173..821606 - 1434 WP_126317438.1 6-phospho-beta-glucosidase BglA -
EL073_RS04140 821727..822455 - 729 WP_126319758.1 MurR/RpiR family transcriptional regulator -
EL073_RS04145 822508..822819 + 312 WP_048225466.1 N(4)-acetylcytidine aminohydrolase -
EL073_RS04150 822983..823645 + 663 WP_126317439.1 hemolysin III family protein -
EL073_RS04155 823777..824760 - 984 WP_126317440.1 tRNA-modifying protein YgfZ -
EL073_RS04165 825018..825284 + 267 WP_003825514.1 FAD assembly factor SdhE Antitoxin
EL073_RS04170 825265..825672 + 408 WP_003825515.1 protein YgfX Toxin
EL073_RS04175 825774..826295 - 522 WP_003026933.1 flavodoxin FldB -
EL073_RS04180 826409..827305 + 897 WP_126317441.1 site-specific tyrosine recombinase XerD -
EL073_RS04185 827329..828042 + 714 WP_126317442.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
EL073_RS04190 828048..829781 + 1734 WP_126317443.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 15882.76 Da        Isoelectric Point: 11.3523

>T287060 WP_003825515.1 NZ_LR134214:825265-825672 [Citrobacter portucalensis]
VVQWQSDLRVSWRAQWLSLLIHGLVAVFILLMPWPLSYTPLWLVLLSLVVFDSVRSQRRINACQGEIRLLMDGRLRWQGQ
EWSIVSAPWMVKTGMMLRLRSDAGKRQHLWLAADSMDDAEWRDLRRLMLQKAKQG

Download         Length: 408 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10615.14 Da        Isoelectric Point: 5.1700

>AT287060 WP_003825514.1 NZ_LR134214:825018-825284 [Citrobacter portucalensis]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFIRLLECDDPDLFNWLMNHGKPADEQLEQMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References