Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1808529..1808696 | Replicon | chromosome |
| Accession | NZ_LR134201 | ||
| Organism | Cedecea lapagei strain NCTC11466 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1808591..1808694 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1808529..1808696 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL098_RS08780 | 1803587..1805645 | + | 2059 | Protein_1692 | oligopeptidase B | - |
| EL098_RS08785 | 1805642..1806313 | - | 672 | WP_126355877.1 | exodeoxyribonuclease X | - |
| EL098_RS08790 | 1806442..1806672 | - | 231 | WP_126355878.1 | DNA polymerase III subunit theta | - |
| EL098_RS08795 | 1806814..1807188 | + | 375 | WP_126355879.1 | CopC domain-containing protein YobA | - |
| EL098_RS08800 | 1807194..1808069 | + | 876 | WP_126355880.1 | copper homeostasis membrane protein CopD | - |
| EL098_RS08805 | 1808098..1808442 | + | 345 | WP_126355881.1 | YebY family protein | - |
| - | 1808529..1808696 | - | 168 | - | - | Antitoxin |
| - | 1808591..1808694 | + | 104 | - | - | Toxin |
| EL098_RS08810 | 1808984..1810480 | + | 1497 | WP_126355882.1 | SulP family inorganic anion transporter | - |
| EL098_RS08815 | 1810733..1811980 | + | 1248 | WP_126355883.1 | MFS transporter | - |
| EL098_RS08820 | 1811995..1812528 | + | 534 | WP_197718547.1 | GNAT family N-acetyltransferase | - |
| EL098_RS08825 | 1812546..1812737 | - | 192 | WP_126355884.1 | YebW family protein | - |
| EL098_RS08830 | 1812843..1813082 | - | 240 | WP_126355885.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287020 NZ_LR134201:1808591-1808694 [Cedecea lapagei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT287020 NZ_LR134201:c1808696-1808529 [Cedecea lapagei]
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGACGCAGGTTTTCCAGTCCGCAACAAAAGTGGTCAG
AAAAAAGC
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGACGCAGGTTTTCCAGTCCGCAACAAAAGTGGTCAG
AAAAAAGC
