Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1817005..1817152 | Replicon | chromosome |
| Accession | NZ_LR134196 | ||
| Organism | Klebsiella quasipneumoniae strain NCTC11357 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1817046..1817148 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1817005..1817152 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL110_RS08955 | 1812140..1814200 | + | 2061 | WP_126494252.1 | oligopeptidase B | - |
| EL110_RS08960 | 1814204..1814863 | - | 660 | WP_126494253.1 | exodeoxyribonuclease X | - |
| EL110_RS08965 | 1814942..1815172 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EL110_RS08970 | 1815285..1815659 | + | 375 | WP_065877427.1 | CopC domain-containing protein YobA | - |
| EL110_RS08975 | 1815663..1816532 | + | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| EL110_RS08980 | 1816549..1816887 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1817005..1817152 | - | 148 | - | - | Antitoxin |
| - | 1817046..1817148 | + | 103 | - | - | Toxin |
| EL110_RS25305 | 1817536..1817679 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| EL110_RS08990 | 1817783..1818751 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| EL110_RS08995 | 1818908..1819561 | + | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| EL110_RS09000 | 1819558..1819749 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EL110_RS09005 | 1819847..1820086 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EL110_RS09010 | 1820203..1821636 | - | 1434 | WP_032456308.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T287004 NZ_LR134196:1817046-1817148 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT287004 NZ_LR134196:c1817152-1817005 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
