Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2688701..2688902 | Replicon | chromosome |
| Accession | NZ_LR134164 | ||
| Organism | Enterobacter hormaechei strain NCTC11571 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2688706..2688809 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2688701..2688902 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL051_RS12915 | 2684969..2686411 | + | 1443 | WP_108367220.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EL051_RS12920 | 2686516..2686755 | + | 240 | WP_006811010.1 | YebV family protein | - |
| EL051_RS12925 | 2686790..2687434 | - | 645 | WP_126314966.1 | protein-serine/threonine phosphatase | - |
| EL051_RS12930 | 2687602..2688582 | + | 981 | WP_126314967.1 | VirK/YbjX family protein | - |
| EL051_RS12935 | 2688628..2688825 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2688701..2688902 | + | 202 | - | - | Antitoxin |
| - | 2688706..2688809 | - | 104 | - | - | Toxin |
| EL051_RS12940 | 2688951..2689289 | - | 339 | WP_022648464.1 | YebY family protein | - |
| EL051_RS12945 | 2689306..2690175 | - | 870 | WP_023300432.1 | copper homeostasis membrane protein CopD | - |
| EL051_RS12950 | 2690177..2690548 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| EL051_RS12955 | 2690686..2690916 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| EL051_RS12960 | 2691028..2691666 | + | 639 | WP_023300434.1 | carbon-nitrogen hydrolase family protein | - |
| EL051_RS12965 | 2691691..2692353 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286928 NZ_LR134164:c2688809-2688706 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT286928 NZ_LR134164:2688701-2688902 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAGACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAGACCGC
