Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4438924..4439018 | Replicon | chromosome |
| Accession | NZ_LR134163 | ||
| Organism | Yersinia pseudotuberculosis strain NCTC10217 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4438924..4439017 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4438924..4439018 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL027_RS20250 | 4434514..4435464 | + | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
| EL027_RS20255 | 4435524..4435754 | - | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| EL027_RS20260 | 4436155..4436664 | + | 510 | WP_002211092.1 | non-heme ferritin | - |
| EL027_RS20265 | 4437043..4437429 | + | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| EL027_RS20270 | 4437432..4438316 | + | 885 | WP_012304224.1 | copper homeostasis membrane protein CopD | - |
| EL027_RS20275 | 4438413..4438754 | + | 342 | WP_002211095.1 | YebY family protein | - |
| - | 4438924..4439017 | + | 94 | - | - | Toxin |
| - | 4438924..4439018 | - | 95 | - | - | Antitoxin |
| EL027_RS20285 | 4439277..4439603 | - | 327 | WP_002211097.1 | DUF1493 family protein | - |
| EL027_RS20290 | 4439810..4441018 | + | 1209 | WP_002209743.1 | IS256 family transposase | - |
| EL027_RS20295 | 4440962..4441378 | - | 417 | Protein_3774 | hypothetical protein | - |
| EL027_RS20300 | 4441795..4442769 | - | 975 | WP_012413651.1 | hypothetical protein | - |
| EL027_RS20305 | 4442791..4443174 | - | 384 | WP_158499507.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 4439810..4441018 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T286921 NZ_LR134163:4438924-4439017 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT286921 NZ_LR134163:c4439018-4438924 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
