Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2858307..2858425 | Replicon | chromosome |
| Accession | NZ_LR134161 | ||
| Organism | Yersinia enterocolitica subsp. enterocolitica strain NCTC13629 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2858309..2858403 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2858307..2858425 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL026_RS13390 | 2854135..2854587 | + | 453 | WP_005163578.1 | phage tail protein | - |
| EL026_RS13395 | 2854584..2855726 | + | 1143 | WP_005163579.1 | phage late control D family protein | - |
| EL026_RS13400 | 2855819..2856040 | + | 222 | WP_005163580.1 | DNA-binding transcriptional regulator | - |
| EL026_RS13405 | 2856125..2856940 | - | 816 | WP_005163581.1 | hypothetical protein | - |
| EL026_RS13410 | 2857181..2858251 | + | 1071 | WP_023161015.1 | tyrosine-type recombinase/integrase | - |
| - | 2858307..2858425 | + | 119 | - | - | Antitoxin |
| - | 2858309..2858403 | - | 95 | - | - | Toxin |
| EL026_RS13415 | 2858578..2858919 | - | 342 | WP_005163587.1 | YebY family protein | - |
| EL026_RS13420 | 2859016..2859900 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| EL026_RS13425 | 2859902..2860288 | - | 387 | WP_005163603.1 | CopC domain-containing protein YobA | - |
| EL026_RS13430 | 2860679..2861188 | - | 510 | WP_005163604.1 | non-heme ferritin | - |
| EL026_RS13435 | 2861571..2861804 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| EL026_RS13440 | 2861854..2862810 | - | 957 | WP_005163605.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | ystA | 2701711..2957407 | 255696 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T286910 NZ_LR134161:c2858403-2858309 [Yersinia enterocolitica subsp. enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT286910 NZ_LR134161:2858307-2858425 [Yersinia enterocolitica subsp. enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
