Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2047484..2047628 | Replicon | chromosome |
| Accession | NZ_LR134151 | ||
| Organism | Serratia plymuthica strain NCTC8900 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2047528..2047624 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2047484..2047628 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL066_RS09900 | 2042927..2043880 | + | 954 | WP_126482015.1 | prolyl aminopeptidase | - |
| EL066_RS09905 | 2043990..2044184 | + | 195 | Protein_1895 | transposase domain-containing protein | - |
| EL066_RS09910 | 2044279..2044509 | - | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| EL066_RS09915 | 2044884..2045402 | + | 519 | WP_126482017.1 | non-heme ferritin | - |
| EL066_RS09920 | 2045707..2046090 | + | 384 | WP_126482019.1 | CopC domain-containing protein YobA | - |
| EL066_RS09925 | 2046094..2046975 | + | 882 | WP_126482021.1 | copper homeostasis membrane protein CopD | - |
| EL066_RS09930 | 2047045..2047386 | + | 342 | WP_126482023.1 | YebY family protein | - |
| - | 2047484..2047628 | - | 145 | - | - | Antitoxin |
| - | 2047528..2047624 | + | 97 | - | - | Toxin |
| EL066_RS09935 | 2047703..2048197 | - | 495 | WP_126482025.1 | tyrosine-type recombinase/integrase | - |
| EL066_RS09940 | 2048154..2048621 | + | 468 | WP_126482027.1 | pyocin knob domain-containing protein | - |
| EL066_RS09945 | 2048821..2049906 | + | 1086 | WP_126482029.1 | nucleoid-associated protein | - |
| EL066_RS09950 | 2049907..2051196 | + | 1290 | WP_126482031.1 | hypothetical protein | - |
| EL066_RS09955 | 2051460..2051831 | - | 372 | WP_126486335.1 | tyrosine-type recombinase/integrase | - |
| EL066_RS09960 | 2051931..2052581 | + | 651 | WP_126482033.1 | metal-binding protein ZinT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2040522..2062782 | 22260 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T286864 NZ_LR134151:2047528-2047624 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 145 bp
>AT286864 NZ_LR134151:c2047628-2047484 [Serratia plymuthica]
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
