Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 871827..871966 | Replicon | chromosome |
| Accession | NZ_LR134138 | ||
| Organism | Kluyvera intermedia strain NCTC12125 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 871864..871966 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 871827..871966 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL028_RS04290 | 868300..868959 | - | 660 | WP_062776160.1 | exodeoxyribonuclease X | - |
| EL028_RS04295 | 868983..869651 | - | 669 | WP_062776162.1 | carbon-nitrogen hydrolase family protein | - |
| EL028_RS04300 | 869740..869970 | - | 231 | WP_062776164.1 | DNA polymerase III subunit theta | - |
| EL028_RS04305 | 870108..870482 | + | 375 | WP_062776289.1 | CopC domain-containing protein YobA | - |
| EL028_RS04310 | 870485..871354 | + | 870 | WP_062776166.1 | copper homeostasis membrane protein CopD | - |
| EL028_RS04315 | 871369..871707 | + | 339 | WP_126441004.1 | YebY family protein | - |
| - | 871827..871966 | - | 140 | - | - | Antitoxin |
| - | 871864..871966 | + | 103 | - | - | Toxin |
| EL028_RS04325 | 872443..873378 | + | 936 | WP_062776168.1 | kdo(2)-lipid IV(A) palmitoleoyltransferase | - |
| EL028_RS04330 | 873413..873652 | - | 240 | WP_062776169.1 | DUF1480 family protein | - |
| EL028_RS04335 | 873764..875203 | - | 1440 | Protein_831 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 803144..888226 | 85082 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T286839 NZ_LR134138:871864-871966 [Kluyvera intermedia]
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 140 bp
>AT286839 NZ_LR134138:c871966-871827 [Kluyvera intermedia]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTCAATCGCCTTGCTTTATAAGAATAGGATGACCGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTCAATCGCCTTGCTTTATAAGAATAGGATGACCGTGACAGGTTTTCCAGT
