Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1885167..1885338 | Replicon | chromosome |
| Accession | NZ_LR134136 | ||
| Organism | Atlantibacter hermannii strain NCTC12129 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1885227..1885331 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1885167..1885338 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL032_RS08670 (NCTC12129_01998) | 1880310..1882370 | + | 2061 | WP_002462892.1 | oligopeptidase B | - |
| EL032_RS08675 (NCTC12129_01999) | 1882367..1883035 | - | 669 | WP_002462890.1 | exodeoxyribonuclease X | - |
| EL032_RS08680 (NCTC12129_02000) | 1883081..1883311 | - | 231 | WP_002462888.1 | DNA polymerase III subunit theta | - |
| EL032_RS08685 (NCTC12129_02001) | 1883462..1883836 | + | 375 | WP_040459491.1 | CopC domain-containing protein YobA | - |
| EL032_RS08690 (NCTC12129_02002) | 1883838..1884713 | + | 876 | WP_002462885.1 | copper homeostasis membrane protein CopD | - |
| EL032_RS08695 (NCTC12129_02003) | 1884738..1885076 | + | 339 | WP_040459559.1 | YebY family protein | - |
| - | 1885167..1885338 | - | 172 | - | - | Antitoxin |
| - | 1885227..1885331 | + | 105 | - | - | Toxin |
| EL032_RS08700 (NCTC12129_02008) | 1885844..1886489 | + | 646 | Protein_1713 | metallophosphoesterase | - |
| EL032_RS08705 | 1886490..1886683 | - | 194 | Protein_1714 | YebW family protein | - |
| EL032_RS08710 (NCTC12129_02009) | 1886790..1887029 | - | 240 | WP_002462877.1 | YebV family protein | - |
| EL032_RS08715 (NCTC12129_02010) | 1887144..1888581 | - | 1438 | Protein_1716 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1866073..1888533 | 22460 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T286833 NZ_LR134136:1885227-1885331 [Atlantibacter hermannii]
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 172 bp
>AT286833 NZ_LR134136:c1885338-1885167 [Atlantibacter hermannii]
AAAAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGTTCAAAAAAA
AAAAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGTTCAAAAAAA
