Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3663420..3663542 | Replicon | chromosome |
| Accession | NZ_LR134117 | ||
| Organism | Serratia odorifera strain NCTC11214 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3663442..3663538 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3663420..3663542 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL065_RS17625 | 3659273..3660226 | + | 954 | WP_004961878.1 | prolyl aminopeptidase | - |
| EL065_RS17630 | 3660284..3660514 | - | 231 | WP_039992023.1 | DNA polymerase III subunit theta | - |
| EL065_RS17635 | 3660880..3661399 | + | 520 | Protein_3417 | non-heme ferritin | - |
| EL065_RS17640 | 3661621..3662004 | + | 384 | WP_004961886.1 | CopC domain-containing protein YobA | - |
| EL065_RS17645 | 3662008..3662889 | + | 882 | WP_004961888.1 | copper homeostasis membrane protein CopD | - |
| EL065_RS17650 | 3662959..3663300 | + | 342 | WP_004961891.1 | YebY family protein | - |
| - | 3663420..3663542 | - | 123 | - | - | Antitoxin |
| - | 3663442..3663538 | + | 97 | - | - | Toxin |
| EL065_RS17660 | 3664070..3664363 | - | 294 | Protein_3421 | DUF1493 family protein | - |
| EL065_RS17665 | 3664357..3664815 | - | 459 | WP_004961899.1 | hypothetical protein | - |
| EL065_RS17670 | 3664928..3665110 | + | 183 | WP_128135958.1 | hypothetical protein | - |
| EL065_RS17675 | 3665545..3665745 | + | 201 | WP_004961906.1 | hypothetical protein | - |
| EL065_RS17680 | 3665793..3666926 | - | 1134 | Protein_3425 | beta-lactamase | - |
| EL065_RS17685 | 3667153..3668025 | + | 873 | Protein_3426 | LysR family transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T286825 NZ_LR134117:3663442-3663538 [Serratia odorifera]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 123 bp
>AT286825 NZ_LR134117:c3663542-3663420 [Serratia odorifera]
AGACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAG
AGACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAG
