Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2084794..2084885 Replicon chromosome
Accession NZ_LR134116
Organism Yersinia intermedia strain NCTC11469

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2084794..2084877 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2084794..2084885 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL015_RS09460 2080375..2081331 + 957 WP_032905818.1 prolyl aminopeptidase -
EL015_RS09465 2081385..2081615 - 231 WP_005183015.1 DNA polymerase III subunit theta -
EL015_RS09470 2082006..2082509 + 504 WP_005183013.1 non-heme ferritin -
EL015_RS09475 2082898..2083284 + 387 WP_005183010.1 CopC domain-containing protein YobA -
EL015_RS09480 2083286..2084170 + 885 WP_005183008.1 copper homeostasis membrane protein CopD -
EL015_RS09485 2084267..2084608 + 342 WP_005183006.1 YebY family protein -
- 2084794..2084877 + 84 - - Toxin
- 2084794..2084885 - 92 - - Antitoxin
EL015_RS09490 2084953..2085822 - 870 WP_086018938.1 tyrosine-type recombinase/integrase -
EL015_RS21695 2085912..2086028 - 117 WP_161597802.1 phage integrase Arm DNA-binding domain-containing protein -
EL015_RS09495 2086139..2086576 - 438 WP_005183002.1 universal stress protein UspF -
EL015_RS09500 2087007..2087183 - 177 WP_032905817.1 GhoT/OrtT family toxin -
EL015_RS09505 2087530..2088789 - 1260 WP_005182999.1 mechanosensitive ion channel -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 84 bp

>T286810 NZ_LR134116:2084794-2084877 [Yersinia intermedia]
ATTAATGCCAACTTTTAGCGCACGGCTCTGTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTT
TTTT

Antitoxin


Download         Length: 92 bp

>AT286810 NZ_LR134116:c2084885-2084794 [Yersinia intermedia]
AACAAATTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGACAGAGCCGTGCGCTAAAA
GTTGGCATTAAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References