Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2206903..2207174 | Replicon | chromosome |
| Accession | NZ_LR134092 | ||
| Organism | Escherichia coli strain NCTC10444 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2207033..2207136 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2206903..2207174 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL041_RS10655 | 2203458..2204120 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL041_RS10660 | 2204144..2204800 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| EL041_RS10665 | 2204902..2205132 | - | 231 | WP_000916760.1 | DNA polymerase III subunit theta | - |
| EL041_RS10670 | 2205271..2205645 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL041_RS10675 | 2205649..2206521 | + | 873 | WP_000879287.1 | copper homeostasis membrane protein CopD | - |
| EL041_RS10680 | 2206534..2206875 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2206903..2207174 | - | 272 | - | - | Antitoxin |
| - | 2207033..2207136 | + | 104 | - | - | Toxin |
| EL041_RS10685 | 2207271..2207927 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| EL041_RS10690 | 2207928..2208119 | - | 192 | WP_001313035.1 | YebW family protein | - |
| EL041_RS10695 | 2208224..2208460 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL041_RS10700 | 2208578..2210017 | - | 1440 | WP_001695829.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286764 NZ_LR134092:2207033-2207136 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT286764 NZ_LR134092:c2207174-2206903 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
