Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2074689..2074960 | Replicon | chromosome |
| Accession | NZ_LR134080 | ||
| Organism | Escherichia coli strain NCTC9082 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2074819..2074922 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2074689..2074960 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL023_RS10130 | 2071244..2071906 | - | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
| EL023_RS10135 | 2071930..2072586 | - | 657 | WP_115189031.1 | carbon-nitrogen hydrolase family protein | - |
| EL023_RS10140 | 2072688..2072918 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL023_RS10145 | 2073057..2073431 | + | 375 | WP_024243787.1 | CopC domain-containing protein YobA | - |
| EL023_RS10150 | 2073435..2074307 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EL023_RS10155 | 2074320..2074661 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2074689..2074960 | - | 272 | - | - | Antitoxin |
| - | 2074819..2074922 | + | 104 | - | - | Toxin |
| EL023_RS10160 | 2075057..2075713 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EL023_RS10165 | 2075714..2075905 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EL023_RS10170 | 2076010..2076246 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL023_RS10175 | 2076364..2077803 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286655 NZ_LR134080:2074819-2074922 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT286655 NZ_LR134080:c2074960-2074689 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
