Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2244352..2244623 | Replicon | chromosome |
| Accession | NZ_LR134079 | ||
| Organism | Escherichia coli strain NCTC9112 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2244482..2244585 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2244352..2244623 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL053_RS11185 | 2240907..2241569 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL053_RS11190 | 2241593..2242249 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| EL053_RS11195 | 2242351..2242581 | - | 231 | WP_000916760.1 | DNA polymerase III subunit theta | - |
| EL053_RS11200 | 2242720..2243094 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL053_RS11205 | 2243098..2243970 | + | 873 | WP_000879287.1 | copper homeostasis membrane protein CopD | - |
| EL053_RS11210 | 2243983..2244324 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2244352..2244623 | - | 272 | - | - | Antitoxin |
| - | 2244482..2244585 | + | 104 | - | - | Toxin |
| EL053_RS11215 | 2244720..2245376 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| EL053_RS11220 | 2245377..2245568 | - | 192 | WP_001313035.1 | YebW family protein | - |
| EL053_RS11225 | 2245673..2245909 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL053_RS11230 | 2246027..2247466 | - | 1440 | WP_001695829.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286631 NZ_LR134079:2244482-2244585 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT286631 NZ_LR134079:c2244623-2244352 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
