Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1946901..1947172 | Replicon | chromosome |
| Accession | NZ_LR134075 | ||
| Organism | Escherichia coli strain NCTC9084 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1947031..1947134 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1946901..1947172 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL019_RS09425 | 1943456..1944118 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL019_RS09430 | 1944142..1944798 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL019_RS09435 | 1944900..1945130 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL019_RS09440 | 1945269..1945643 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL019_RS09445 | 1945647..1946519 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| EL019_RS09450 | 1946532..1946873 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1946901..1947172 | - | 272 | - | - | Antitoxin |
| - | 1947031..1947134 | + | 104 | - | - | Toxin |
| EL019_RS09455 | 1947269..1947925 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EL019_RS09460 | 1947926..1948117 | - | 192 | WP_000457842.1 | YebW family protein | - |
| EL019_RS09465 | 1948222..1948458 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL019_RS09470 | 1948576..1950015 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286611 NZ_LR134075:1947031-1947134 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT286611 NZ_LR134075:c1947172-1946901 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
