Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | vapBC/DUF433(antitoxin) |
Location | 2935486..2936045 | Replicon | chromosome |
Accession | NC_019902 | ||
Organism | Thioalkalivibrio nitratireducens DSM 14787 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | TVNIR_RS13450 | Protein ID | WP_043739753.1 |
Coordinates | 2935713..2936045 (+) | Length | 111 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | - |
Locus tag | TVNIR_RS13445 | Protein ID | WP_043740679.1 |
Coordinates | 2935486..2935713 (+) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
TVNIR_RS13435 | 2932224..2933658 | - | 1435 | Protein_2698 | transposase | - |
TVNIR_RS13440 | 2933674..2934341 | - | 668 | Protein_2699 | DNA methylase | - |
TVNIR_RS13445 | 2935486..2935713 | + | 228 | WP_043740679.1 | DUF433 domain-containing protein | Antitoxin |
TVNIR_RS13450 | 2935713..2936045 | + | 333 | WP_043739753.1 | DUF5615 family PIN-like protein | Toxin |
TVNIR_RS13455 | 2936305..2936577 | - | 273 | WP_015259594.1 | type II toxin-antitoxin system YafQ family toxin | - |
TVNIR_RS13460 | 2936705..2937093 | - | 389 | Protein_2703 | transposase | - |
TVNIR_RS13465 | 2937391..2938116 | + | 726 | WP_015259596.1 | hypothetical protein | - |
TVNIR_RS13470 | 2938116..2939087 | + | 972 | WP_015259597.1 | polyprenyl synthetase family protein | - |
TVNIR_RS13475 | 2939079..2939819 | - | 741 | WP_015259598.1 | class I SAM-dependent methyltransferase | - |
TVNIR_RS13480 | 2940261..2940693 | - | 433 | Protein_2707 | archease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | flank | IS/Tn | - | - | 2936770..2937093 | 323 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 111 a.a. Molecular weight: 12311.25 Da Isoelectric Point: 4.8483
>T28659 WP_043739753.1 NC_019902:2935713-2936045 [Thioalkalivibrio nitratireducens DSM 14787]
MRFLVDAQLPPALARWLSAQGCPADHVADLGMAESPDRVIWEWAAQESVTIVTKDEDFAIWRITSSAGTPRVVWLRMGNT
RRSELLARMEILLPRVLAALEGGETLIEIR
MRFLVDAQLPPALARWLSAQGCPADHVADLGMAESPDRVIWEWAAQESVTIVTKDEDFAIWRITSSAGTPRVVWLRMGNT
RRSELLARMEILLPRVLAALEGGETLIEIR
Download Length: 333 bp
>T28659 NC_019902:2935713-2936045 [Thioalkalivibrio nitratireducens DSM 14787]
ATGCGCTTTCTGGTGGACGCGCAACTGCCGCCGGCCCTTGCTCGGTGGCTGAGCGCCCAGGGCTGTCCAGCCGACCACGT
CGCCGATCTCGGGATGGCAGAATCCCCGGATCGAGTGATTTGGGAGTGGGCAGCACAAGAGAGTGTGACGATTGTCACCA
AGGATGAAGACTTCGCCATCTGGCGAATCACCTCCAGTGCCGGGACGCCACGGGTCGTGTGGCTCAGAATGGGCAACACT
CGCCGGTCGGAATTGCTGGCGCGCATGGAAATTCTATTGCCTCGGGTTTTGGCCGCCCTGGAGGGCGGCGAGACGCTGAT
CGAAATTCGTTGA
ATGCGCTTTCTGGTGGACGCGCAACTGCCGCCGGCCCTTGCTCGGTGGCTGAGCGCCCAGGGCTGTCCAGCCGACCACGT
CGCCGATCTCGGGATGGCAGAATCCCCGGATCGAGTGATTTGGGAGTGGGCAGCACAAGAGAGTGTGACGATTGTCACCA
AGGATGAAGACTTCGCCATCTGGCGAATCACCTCCAGTGCCGGGACGCCACGGGTCGTGTGGCTCAGAATGGGCAACACT
CGCCGGTCGGAATTGCTGGCGCGCATGGAAATTCTATTGCCTCGGGTTTTGGCCGCCCTGGAGGGCGGCGAGACGCTGAT
CGAAATTCGTTGA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8279.44 Da Isoelectric Point: 4.5349
>AT28659 WP_043740679.1 NC_019902:2935486-2935713 [Thioalkalivibrio nitratireducens DSM 14787]
VSELHRITIDPDVCGGRPCLRGLRIRVKDVLDLLASGASHEEVLQDYPYLEPEDIVAVLEYAARQSDHPVLSVVA
VSELHRITIDPDVCGGRPCLRGLRIRVKDVLDLLASGASHEEVLQDYPYLEPEDIVAVLEYAARQSDHPVLSVVA
Download Length: 228 bp
>AT28659 NC_019902:2935486-2935713 [Thioalkalivibrio nitratireducens DSM 14787]
GTGAGCGAATTGCACCGAATCACGATCGATCCCGACGTCTGCGGAGGACGCCCATGCCTGCGGGGTCTACGCATTCGGGT
CAAGGATGTCCTGGACCTTCTGGCTTCCGGCGCCTCACACGAGGAGGTGCTTCAGGATTACCCCTATCTTGAACCGGAAG
ACATTGTTGCCGTTCTGGAGTACGCCGCCCGCCAGAGTGACCATCCTGTGCTGTCCGTTGTTGCCTGA
GTGAGCGAATTGCACCGAATCACGATCGATCCCGACGTCTGCGGAGGACGCCCATGCCTGCGGGGTCTACGCATTCGGGT
CAAGGATGTCCTGGACCTTCTGGCTTCCGGCGCCTCACACGAGGAGGTGCTTCAGGATTACCCCTATCTTGAACCGGAAG
ACATTGTTGCCGTTCTGGAGTACGCCGCCCGCCAGAGTGACCATCCTGTGCTGTCCGTTGTTGCCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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