Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2237429..2237697 | Replicon | chromosome |
| Accession | NZ_LR134031 | ||
| Organism | Escherichia coli strain NCTC11151 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2237557..2237659 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2237429..2237697 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL024_RS11125 | 2233983..2234645 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL024_RS11130 | 2234668..2235324 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| EL024_RS11135 | 2235426..2235656 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL024_RS11140 | 2235795..2236169 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL024_RS11145 | 2236173..2237045 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| EL024_RS11150 | 2237058..2237399 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2237429..2237697 | - | 269 | - | - | Antitoxin |
| - | 2237557..2237659 | + | 103 | - | - | Toxin |
| EL024_RS11155 | 2237794..2238450 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| EL024_RS11160 | 2238451..2238642 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EL024_RS11165 | 2238747..2238983 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL024_RS11170 | 2239101..2240540 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T286587 NZ_LR134031:2237557-2237659 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCTTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCTTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT286587 NZ_LR134031:c2237697-2237429 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAAGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAAGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
