Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1851584..1851729 | Replicon | chromosome |
| Accession | NZ_LR133964 | ||
| Organism | Klebsiella pneumoniae strain NCTC11359 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1851620..1851722 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1851584..1851729 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL047_RS09165 | 1846714..1848774 | + | 2061 | WP_126438534.1 | oligopeptidase B | - |
| EL047_RS09170 | 1848778..1849437 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| EL047_RS09175 | 1849516..1849746 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EL047_RS09180 | 1849859..1850233 | + | 375 | WP_126438535.1 | CopC domain-containing protein YobA | - |
| EL047_RS09185 | 1850237..1851106 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| EL047_RS09190 | 1851123..1851461 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1851584..1851729 | - | 146 | - | - | Antitoxin |
| - | 1851620..1851722 | + | 103 | - | - | Toxin |
| EL047_RS25340 | 1852096..1852239 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EL047_RS09200 | 1852344..1853312 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EL047_RS09205 | 1853469..1854122 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| EL047_RS09210 | 1854119..1854310 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EL047_RS09215 | 1854408..1854647 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EL047_RS09220 | 1854763..1856196 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T286530 NZ_LR133964:1851620-1851722 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT286530 NZ_LR133964:c1851729-1851584 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
