Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3879177..3879322 | Replicon | chromosome |
| Accession | NZ_LR133932 | ||
| Organism | Klebsiella oxytoca strain NCTC11356 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3879184..3879287 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3879177..3879322 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL063_RS18515 | 3874450..3874968 | + | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
| EL063_RS18520 | 3874986..3875750 | + | 765 | WP_049593003.1 | molecular chaperone | - |
| EL063_RS18525 | 3875753..3878086 | + | 2334 | WP_126489276.1 | fimbrial biogenesis outer membrane usher protein | - |
| EL063_RS18530 | 3878098..3879057 | + | 960 | WP_126489277.1 | spore coat U domain-containing protein | - |
| - | 3879177..3879322 | + | 146 | - | - | Antitoxin |
| - | 3879184..3879287 | - | 104 | - | - | Toxin |
| EL063_RS18535 | 3879444..3879782 | - | 339 | WP_004103344.1 | YebY family protein | - |
| EL063_RS18540 | 3879799..3880668 | - | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| EL063_RS18545 | 3880673..3881047 | - | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| EL063_RS18550 | 3881183..3881413 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| EL063_RS18555 | 3881492..3882151 | + | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| EL063_RS18560 | 3882161..3884221 | - | 2061 | WP_064356175.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286521 NZ_LR133932:c3879287-3879184 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT286521 NZ_LR133932:3879177-3879322 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
