Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2183798..2184069 | Replicon | chromosome |
| Accession | NZ_LR130562 | ||
| Organism | Escherichia coli strain MS14384 isolate MS14384 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2183928..2184031 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2183798..2184069 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW037_RS10590 | 2180353..2181015 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EW037_RS10595 | 2181039..2181695 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| EW037_RS10600 | 2181797..2182027 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EW037_RS10605 | 2182166..2182540 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EW037_RS10610 | 2182544..2183416 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| EW037_RS10615 | 2183429..2183770 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2183798..2184069 | - | 272 | - | - | Antitoxin |
| - | 2183928..2184031 | + | 104 | - | - | Toxin |
| EW037_RS10620 | 2184166..2184822 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| EW037_RS10625 | 2184823..2185014 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EW037_RS10630 | 2185119..2185355 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EW037_RS10635 | 2185473..2186912 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2176488..2186918 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286457 NZ_LR130562:2183928-2184031 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT286457 NZ_LR130562:c2184069-2183798 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
