Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2260368..2260639 | Replicon | chromosome |
Accession | NZ_LR130555 | ||
Organism | Escherichia coli strain MS14385 isolate MS14385 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2260498..2260601 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2260368..2260639 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EW040_RS10975 | 2256923..2257585 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
EW040_RS10980 | 2257609..2258265 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
EW040_RS10985 | 2258367..2258597 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
EW040_RS10990 | 2258736..2259110 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
EW040_RS10995 | 2259114..2259986 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
EW040_RS11000 | 2259999..2260340 | + | 342 | WP_000976472.1 | YebY family protein | - |
- | 2260368..2260639 | - | 272 | - | - | Antitoxin |
- | 2260498..2260601 | + | 104 | - | - | Toxin |
EW040_RS11005 | 2260736..2261392 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
EW040_RS11010 | 2261393..2261584 | - | 192 | WP_001296140.1 | YebW family protein | - |
EW040_RS11015 | 2261689..2261925 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
EW040_RS11020 | 2262043..2263482 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286423 NZ_LR130555:2260498-2260601 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT286423 NZ_LR130555:c2260639-2260368 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT