Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2069358..2069629 | Replicon | chromosome |
| Accession | NZ_LR130552 | ||
| Organism | Escherichia coli strain MS14386 isolate MS14386 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2069488..2069591 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2069358..2069629 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW035_RS09915 | 2065913..2066575 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EW035_RS09920 | 2066599..2067255 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EW035_RS09925 | 2067357..2067587 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EW035_RS09930 | 2067726..2068100 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| EW035_RS09935 | 2068104..2068976 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EW035_RS09940 | 2068989..2069330 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2069358..2069629 | - | 272 | - | - | Antitoxin |
| - | 2069488..2069591 | + | 104 | - | - | Toxin |
| EW035_RS09945 | 2069726..2070382 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| EW035_RS09950 | 2070383..2070574 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EW035_RS09955 | 2070679..2070915 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EW035_RS09960 | 2071033..2072472 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286400 NZ_LR130552:2069488-2069591 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT286400 NZ_LR130552:c2069629-2069358 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
