Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2681351..2681619 | Replicon | chromosome |
| Accession | NZ_LR130545 | ||
| Organism | Escherichia coli strain B36 isolate B36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2681389..2681491 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2681351..2681619 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW036_RS13430 | 2678509..2679948 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EW036_RS13435 | 2680065..2680301 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EW036_RS13440 | 2680406..2680597 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EW036_RS13445 | 2680598..2681254 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2681351..2681619 | + | 269 | - | - | Antitoxin |
| - | 2681389..2681491 | - | 103 | - | - | Toxin |
| EW036_RS13450 | 2681649..2681990 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EW036_RS13455 | 2682003..2682875 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| EW036_RS13460 | 2682879..2683253 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EW036_RS13465 | 2683392..2683622 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EW036_RS13470 | 2683724..2684380 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| EW036_RS13475 | 2684404..2685066 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T286358 NZ_LR130545:c2681491-2681389 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT286358 NZ_LR130545:2681351-2681619 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
