Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1878171..1878315 | Replicon | chromosome |
| Accession | NZ_LR130538 | ||
| Organism | Klebsiella variicola strain AJ292 isolate AJ292 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1878207..1878309 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1878171..1878315 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW044_RS09245 | 1873301..1875361 | + | 2061 | WP_032746815.1 | oligopeptidase B | - |
| EW044_RS09250 | 1875365..1876024 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| EW044_RS09255 | 1876103..1876333 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| EW044_RS09260 | 1876447..1876821 | + | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| EW044_RS09265 | 1876825..1877694 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| EW044_RS09270 | 1877711..1878049 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1878171..1878315 | - | 145 | - | - | Antitoxin |
| - | 1878207..1878309 | + | 103 | - | - | Toxin |
| EW044_RS26710 | 1878694..1878837 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| EW044_RS09280 | 1878941..1879909 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| EW044_RS09285 | 1880066..1880719 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| EW044_RS09290 | 1880716..1880907 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EW044_RS09295 | 1881005..1881244 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EW044_RS09300 | 1881360..1882793 | - | 1434 | WP_012967754.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T286277 NZ_LR130538:1878207-1878309 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT286277 NZ_LR130538:c1878315-1878171 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
