Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 3465448..3466669 Replicon chromosome
Accession NZ_LR130535
Organism Pseudomonas aeruginosa isolate paerg011

Toxin (Protein)


Gene name vapC Uniprot ID A0A0C7CS07
Locus tag EJN52_RS16230 Protein ID WP_003102740.1
Coordinates 3466091..3466669 (+) Length 193 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag EJN52_RS16225 Protein ID WP_003088112.1
Coordinates 3465448..3466002 (+) Length 185 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EJN52_RS16200 3461016..3461567 + 552 WP_003132721.1 XRE family transcriptional regulator -
EJN52_RS16205 3461564..3461962 - 399 WP_003088123.1 NADH-quinone oxidoreductase subunit A -
EJN52_RS16210 3461975..3462298 - 324 WP_003102734.1 multidrug efflux SMR transporter -
EJN52_RS16215 3462629..3463090 + 462 WP_003102736.1 (2Fe-2S)-binding protein -
EJN52_RS16220 3463095..3465290 + 2196 WP_014603034.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
EJN52_RS16225 3465448..3466002 + 555 WP_003088112.1 helix-turn-helix domain-containing protein Antitoxin
EJN52_RS16230 3466091..3466669 + 579 WP_003102740.1 HD domain-containing protein Toxin
EJN52_RS16235 3466777..3467964 - 1188 WP_003102741.1 HlyD family efflux transporter periplasmic adaptor subunit -
EJN52_RS16240 3467954..3470125 - 2172 WP_014603035.1 type I secretion system permease/ATPase -
EJN52_RS16245 3470115..3471392 - 1278 WP_003102743.1 TolC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HD domain

(16-170)

Antitoxin

Cro/C1-type helix-turn-helix domain

(14-62)


Sequences

Toxin        


Download         Length: 193 a.a.        Molecular weight: 21869.70 Da        Isoelectric Point: 5.3655

>T286259 WP_003102740.1 NZ_LR130535:3466091-3466669 [Pseudomonas aeruginosa]
MSLELLSNRLEFLREAERLKDVLRSAHTSSGRPESTAEHSWRLCLMALAFEDQLAGLDLGKVLRMCVVHDLGEAIHGDIP
AVEQAAHPDKGEQERADLLQLTRHLDAPLRDRLLALWDEYERGESAEALAVKALDKLETLLQHTQGDNPADFDYAFNLDY
GRRYTDRAPLFKTLRELLDARTRQRLAARRDA

Download         Length: 579 bp

Antitoxin


Download         Length: 185 a.a.        Molecular weight: 20454.63 Da        Isoelectric Point: 8.1590

>AT286259 WP_003088112.1 NZ_LR130535:3465448-3466002 [Pseudomonas aeruginosa]
MTEPLPSSSLGPALRRWRLLHRVKQTHAAELLGVAQSTISRWESGTQALLVEERARLERLLGARLEAAADQALARLVEAN
PQPVHLICDLTHRLLACSPARAAQFGVPLGELLDRSLWPYCSEEILRQEATLEELGWRELLAPPALEFASGANASAIVPI
RRSRCRWTRMTLSDGRAVRLVETL

Download         Length: 555 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0C7CS07

Antitoxin

Source ID Structure

References