Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2865576..2865847 | Replicon | chromosome |
| Accession | NZ_LR025101 | ||
| Organism | Escherichia coli isolate EC-1639 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2865614..2865717 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2865576..2865847 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC1639_RS13880 | 2862733..2864172 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EC1639_RS13885 | 2864290..2864526 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EC1639_RS13890 | 2864631..2864822 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EC1639_RS13895 | 2864823..2865479 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2865576..2865847 | + | 272 | - | - | Antitoxin |
| - | 2865614..2865717 | - | 104 | - | - | Toxin |
| EC1639_RS13900 | 2865875..2866216 | - | 342 | WP_000976481.1 | YebY family protein | - |
| EC1639_RS13905 | 2866229..2867101 | - | 873 | WP_001587145.1 | copper homeostasis membrane protein CopD | - |
| EC1639_RS13910 | 2867105..2867479 | - | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| EC1639_RS13915 | 2867618..2867848 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC1639_RS13920 | 2867950..2868606 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| EC1639_RS13925 | 2868630..2869292 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2862727..2873157 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T285904 NZ_LR025101:c2865717-2865614 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT285904 NZ_LR025101:2865576-2865847 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
