Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2951955..2952100 | Replicon | chromosome |
| Accession | NZ_LR025092 | ||
| Organism | Klebsiella pneumoniae isolate KP9201 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2951962..2952064 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2951955..2952100 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KP920_RS14940 | 2947486..2948919 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KP920_RS14945 | 2949035..2949274 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KP920_RS14950 | 2949372..2949563 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KP920_RS14955 | 2949560..2950213 | - | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| KP920_RS14960 | 2950370..2951338 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KP920_RS28330 | 2951443..2951586 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2951955..2952100 | + | 146 | - | - | Antitoxin |
| - | 2951962..2952064 | - | 103 | - | - | Toxin |
| KP920_RS14970 | 2952223..2952561 | - | 339 | WP_009307539.1 | YebY family protein | - |
| KP920_RS14975 | 2952578..2953447 | - | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| KP920_RS14980 | 2953451..2953825 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KP920_RS14985 | 2953938..2954168 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KP920_RS14990 | 2954247..2954906 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KP920_RS14995 | 2954910..2956970 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T285836 NZ_LR025092:c2952064-2951962 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT285836 NZ_LR025092:2951955-2952100 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
