Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1928450..1928595 | Replicon | chromosome |
| Accession | NZ_LR025088 | ||
| Organism | Klebsiella pneumoniae isolate KP980 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1928457..1928559 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1928450..1928595 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KP980_RS09845 | 1923981..1925414 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KP980_RS09850 | 1925530..1925769 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KP980_RS09855 | 1925867..1926058 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KP980_RS09860 | 1926055..1926708 | - | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| KP980_RS09865 | 1926865..1927833 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KP980_RS28575 | 1927938..1928081 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1928450..1928595 | + | 146 | - | - | Antitoxin |
| - | 1928457..1928559 | - | 103 | - | - | Toxin |
| KP980_RS09875 | 1928718..1929056 | - | 339 | WP_009307539.1 | YebY family protein | - |
| KP980_RS09880 | 1929073..1929942 | - | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| KP980_RS09885 | 1929946..1930320 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KP980_RS09890 | 1930433..1930663 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KP980_RS09895 | 1930742..1931401 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KP980_RS09900 | 1931405..1933465 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T285817 NZ_LR025088:c1928559-1928457 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT285817 NZ_LR025088:1928450-1928595 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
