Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 5914921..5915462 Replicon chromosome
Accession NZ_LN890477
Organism Achromobacter xylosoxidans isolate R8

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag BN2910_RS27535 Protein ID WP_026384571.1
Coordinates 5914921..5915196 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag BN2910_RS27540 Protein ID WP_047991248.1
Coordinates 5915196..5915462 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BN2910_RS27515 5910873..5911796 + 924 WP_006385014.1 ABC transporter permease -
BN2910_RS27520 5911802..5912668 + 867 WP_155873619.1 ABC transporter permease -
BN2910_RS27525 5912726..5914465 + 1740 WP_155873621.1 peptidase M14 -
BN2910_RS27530 5914478..5914915 + 438 WP_020928528.1 acetyltransferase -
BN2910_RS27535 5914921..5915196 - 276 WP_026384571.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BN2910_RS27540 5915196..5915462 - 267 WP_047991248.1 ribbon-helix-helix domain-containing protein Antitoxin
BN2910_RS27545 5915709..5916236 + 528 WP_054482172.1 sigma-70 family RNA polymerase sigma factor -
BN2910_RS27550 5916310..5917278 + 969 WP_155874255.1 FecR domain-containing protein -
BN2910_RS27555 5917571..5919940 + 2370 WP_173361383.1 TonB-dependent receptor -
BN2910_RS27560 5919998..5920204 - 207 WP_026384567.1 Hyp domain-containing protein 2 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(8-45)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10710.42 Da        Isoelectric Point: 10.4170

>T285773 WP_026384571.1 NZ_LN890477:c5915196-5914921 [Achromobacter xylosoxidans]
MEMKWTSKALSDLARLHEFLAAVNRPAAVRAVQALVKASSVLPTNSRIGEQLFQFEPREVRRILVGEYEIRYEIRDSIIY
VLRLWHTRENR

Download         Length: 276 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9698.05 Da        Isoelectric Point: 4.7377

>AT285773 WP_047991248.1 NZ_LN890477:c5915462-5915196 [Achromobacter xylosoxidans]
MSPATKVLTAHVPLPLAEKVDQMAVRLDRSRGWIVKQALSAWIAQEEERDKLTQQALADVDAGRIVDDQAVQAWAESLGS
DQPLPLPR

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References