Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 1830280..1830833 Replicon chromosome
Accession NZ_LN890335
Organism Achromobacter xylosoxidans isolate AX_NCIMB_11015_WG

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag BN2877_RS08320 Protein ID WP_054515607.1
Coordinates 1830280..1830558 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag BN2877_RS08325 Protein ID WP_155865067.1
Coordinates 1830627..1830833 (-) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BN2877_RS08295 1826212..1826898 + 687 WP_006386994.1 hypothetical protein -
BN2877_RS08300 1826983..1827459 - 477 WP_006386993.1 bacterioferritin -
BN2877_RS08305 1827884..1828798 - 915 WP_155865065.1 DMT family transporter -
BN2877_RS08310 1828912..1829832 + 921 WP_006386991.1 LysR family transcriptional regulator -
BN2877_RS08315 1829802..1830101 - 300 WP_006386990.1 (2Fe-2S)-binding protein -
BN2877_RS08320 1830280..1830558 - 279 WP_054515607.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BN2877_RS08325 1830627..1830833 - 207 WP_155865067.1 stability determinant Antitoxin
BN2877_RS08330 1830927..1832372 - 1446 WP_024067399.1 RNA polymerase factor sigma-54 -
BN2877_RS08335 1832371..1833021 + 651 WP_024067398.1 hypothetical protein -
BN2877_RS08340 1833213..1834190 + 978 WP_054446050.1 tripartite tricarboxylate transporter substrate binding protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10342.86 Da        Isoelectric Point: 9.0854

>T285759 WP_054515607.1 NZ_LN890335:c1830558-1830280 [Achromobacter xylosoxidans]
MLDVSWLQTAADDLAGIISYIAERSPQAARDLRQRIDNAVLSLARHPCRYRAGRVSGTRECVVHPNYVVAYRVTALAIEV
VNIVHARREYPP

Download         Length: 279 bp

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7759.64 Da        Isoelectric Point: 4.5026

>AT285759 WP_155865067.1 NZ_LN890335:c1830833-1830627 [Achromobacter xylosoxidans]
MGPIPSSILSEFETEEQAVSYDRWFRTKVQASLDDPRPAVSHQRVMARIDAIIETACRRQLDPQDGEN

Download         Length: 207 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References