Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1926902..1927173 | Replicon | chromosome |
| Accession | NZ_LN832404 | ||
| Organism | Escherichia coli K-12 substr. AG100 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1926940..1927043 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1926902..1927173 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EK12AG100_RS09670 | 1924059..1925498 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EK12AG100_RS09675 | 1925616..1925852 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EK12AG100_RS09680 | 1925957..1926148 | + | 192 | WP_000457842.1 | YebW family protein | - |
| EK12AG100_RS09685 | 1926149..1926805 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1926902..1927173 | + | 272 | - | - | Antitoxin |
| - | 1926940..1927043 | - | 104 | - | - | Toxin |
| EK12AG100_RS09695 | 1927201..1927542 | - | 342 | WP_000976476.1 | YebY family protein | - |
| EK12AG100_RS09700 | 1927555..1928427 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| EK12AG100_RS09705 | 1928431..1928805 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EK12AG100_RS09710 | 1928944..1929174 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EK12AG100_RS09715 | 1929276..1929932 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EK12AG100_RS09720 | 1929956..1930618 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T285658 NZ_LN832404:c1927043-1926940 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT285658 NZ_LN832404:1926902-1927173 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
