Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3364755..3364900 | Replicon | chromosome |
| Accession | NZ_LN824133 | ||
| Organism | Klebsiella pneumoniae strain MS6671 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3364762..3364864 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3364755..3364900 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MS6671_RS16730 | 3360286..3361719 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MS6671_RS16735 | 3361835..3362074 | + | 240 | WP_002911393.1 | YebV family protein | - |
| MS6671_RS16740 | 3362172..3362363 | + | 192 | WP_002911395.1 | YebW family protein | - |
| MS6671_RS16745 | 3362360..3363013 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| MS6671_RS16750 | 3363170..3364138 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| MS6671_RS32505 | 3364243..3364386 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 3364755..3364900 | + | 146 | - | - | Antitoxin |
| - | 3364762..3364864 | - | 103 | - | - | Toxin |
| MS6671_RS16760 | 3365023..3365361 | - | 339 | WP_002911404.1 | YebY family protein | - |
| MS6671_RS16765 | 3365378..3366247 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| MS6671_RS16770 | 3366251..3366625 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| MS6671_RS16775 | 3366738..3366968 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MS6671_RS16780 | 3367047..3367706 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MS6671_RS16785 | 3367710..3369770 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T285578 NZ_LN824133:c3364864-3364762 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT285578 NZ_LN824133:3364755-3364900 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
