Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1874251..1874522 | Replicon | chromosome |
| Accession | NZ_LM993812 | ||
| Organism | Escherichia coli strain K-12 substr. HMS174 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1874289..1874392 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1874251..1874522 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECHMS174_RS09330 | 1871408..1872847 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECHMS174_RS09335 | 1872965..1873201 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECHMS174_RS09340 | 1873306..1873497 | + | 192 | WP_000457842.1 | YebW family protein | - |
| ECHMS174_RS09345 | 1873498..1874154 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1874251..1874522 | + | 272 | - | - | Antitoxin |
| - | 1874289..1874392 | - | 104 | - | - | Toxin |
| ECHMS174_RS09355 | 1874550..1874891 | - | 342 | WP_000976476.1 | YebY family protein | - |
| ECHMS174_RS09360 | 1874904..1875776 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| ECHMS174_RS09365 | 1875780..1876154 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECHMS174_RS09370 | 1876293..1876523 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECHMS174_RS09375 | 1876625..1877281 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECHMS174_RS09380 | 1877305..1877967 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T285400 NZ_LM993812:c1874392-1874289 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT285400 NZ_LM993812:1874251-1874522 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
