Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 4721756..4722423 Replicon chromosome
Accession NZ_HG999364
Organism Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 766 isolated from C. illinoinensis

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag KHO05_RS20105 Protein ID WP_212580445.1
Coordinates 4722007..4722423 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag KHO05_RS20100 Protein ID WP_102582218.1
Coordinates 4721756..4722010 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KHO05_RS20075 (XCY_004008) 4717210..4718049 + 840 WP_212580443.1 SDR family oxidoreductase -
KHO05_RS20080 (XCY_004009) 4718200..4719465 + 1266 WP_164739643.1 phospholipase D-like domain-containing protein -
KHO05_RS20085 (XCY_004010) 4719508..4720044 - 537 WP_104650609.1 hypothetical protein -
KHO05_RS20090 (XCY_004011) 4720313..4720519 + 207 WP_212580444.1 hypothetical protein -
KHO05_RS20095 (XCY_004012) 4720506..4721618 + 1113 WP_115678180.1 type II toxin-antitoxin system RelE/ParE family toxin -
KHO05_RS20100 (XCY_004013) 4721756..4722010 + 255 WP_102582218.1 Arc family DNA-binding protein Antitoxin
KHO05_RS20105 (XCY_004014) 4722007..4722423 + 417 WP_212580445.1 type II toxin-antitoxin system VapC family toxin Toxin
KHO05_RS20110 4722404..4722550 - 147 WP_212580446.1 hypothetical protein -
KHO05_RS20115 (XCY_004015) 4722550..4723110 - 561 WP_212580447.1 hypothetical protein -
KHO05_RS20120 (XCY_004016) 4723787..4725412 + 1626 WP_212580448.1 alpha/beta hydrolase-fold protein -
KHO05_RS20125 (XCY_004017) 4725509..4725910 - 402 WP_212580449.1 DUF2384 domain-containing protein -
KHO05_RS20130 (XCY_004018) 4726215..4726670 + 456 WP_181901323.1 hypothetical protein -
KHO05_RS20135 (XCY_004019) 4726699..4726986 - 288 WP_115678184.1 hypothetical protein -
KHO05_RS20140 (XCY_004020) 4727122..4727367 + 246 WP_010364309.1 helix-turn-helix transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4721756..4736240 14484


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-127)

Antitoxin

Arc-like DNA binding domain

(1-41)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14770.04 Da        Isoelectric Point: 5.6845

>T285351 WP_212580445.1 NZ_HG999364:4722007-4722423 [Xanthomonas euroxanthea]
VILLDTNVISELWRPQPNPKVVAWIDAQAVETLFLSVVTVAELRFGIAVMPEGRKRSTLHARLESDVLPLFNGRLLAFDL
DASHAFSTLASKARAAGLTLGRADAYIAATAAAQGLTVATRDTAPFAAMALDVIDPWS

Download         Length: 417 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9103.51 Da        Isoelectric Point: 10.7542

>AT285351 WP_102582218.1 NZ_HG999364:4721756-4722010 [Xanthomonas euroxanthea]
MPSFTVRNIPDEVHRAIRARAALHGRSTEAEIRAILESAAKPADRVKLGSLLVDIGRDAGLTAKQADAFDTLRDKTAIKP
ISLK

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References