Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 65633..66177 Replicon chromosome
Accession NZ_HG999364
Organism Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 766 isolated from C. illinoinensis

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag KHO05_RS00245 Protein ID WP_104585946.1
Coordinates 65878..66177 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag KHO05_RS00240 Protein ID WP_104585948.1
Coordinates 65633..65890 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KHO05_RS00230 (XCY_000046) 62234..64729 - 2496 WP_166766693.1 DEAD/DEAH box helicase -
KHO05_RS00235 (XCY_000047) 64903..65565 + 663 WP_104585950.1 hemolysin III family protein -
KHO05_RS00240 (XCY_000048) 65633..65890 + 258 WP_104585948.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
KHO05_RS00245 (XCY_000049) 65878..66177 + 300 WP_104585946.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
KHO05_RS00250 (XCY_000050) 66189..66707 - 519 WP_244813217.1 hypothetical protein -
KHO05_RS00255 (XCY_000051) 66909..68006 - 1098 WP_244813219.1 ATP-grasp fold amidoligase family protein -
KHO05_RS00260 (XCY_000052) 68347..68991 + 645 WP_104650099.1 glutathione S-transferase family protein -
KHO05_RS00265 (XCY_000053) 69153..69860 + 708 WP_212580481.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11316.00 Da        Isoelectric Point: 9.0380

>T285349 WP_104585946.1 NZ_HG999364:65878-66177 [Xanthomonas euroxanthea]
MAEIVWSEPAVADLDAIADYIALEDAAAAAALVRRVVAHVEQLAEHPESGSRPQELKRSRYRQIVEPPCRVFYRVDGQRV
VVVHVMRSERLLRRNRLSR

Download         Length: 300 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9716.22 Da        Isoelectric Point: 8.6056

>AT285349 WP_104585948.1 NZ_HG999364:65633-65890 [Xanthomonas euroxanthea]
MRTELVTTLKRQATELLADVERDKEPILITQHGLPSAYLVDVTSYERLQQRMAILEGIARGEMAVAEGRSLSHEQAKQRL
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References