285348

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 4770412..4771079 Replicon chromosome
Accession NZ_HG999363
Organism Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag KHN77_RS20155 Protein ID WP_102582219.1
Coordinates 4770663..4771079 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag KHN77_RS20150 Protein ID WP_102582218.1
Coordinates 4770412..4770666 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KHN77_RS20125 (XCY_004026) 4765868..4766707 + 840 WP_119129942.1 SDR family oxidoreductase -
KHN77_RS20130 (XCY_004027) 4766858..4768123 + 1266 WP_180496822.1 phospholipase D-like domain-containing protein -
KHN77_RS20135 (XCY_004028) 4768166..4768702 - 537 WP_119129943.1 hypothetical protein -
KHN77_RS20140 (XCY_004029) 4768970..4769176 + 207 WP_119129944.1 hypothetical protein -
KHN77_RS20145 (XCY_004030) 4769163..4770275 + 1113 WP_119129945.1 type II toxin-antitoxin system RelE/ParE family toxin -
KHN77_RS20150 (XCY_004031) 4770412..4770666 + 255 WP_102582218.1 Arc family DNA-binding protein Antitoxin
KHN77_RS20155 (XCY_004032) 4770663..4771079 + 417 WP_102582219.1 type II toxin-antitoxin system VapC family toxin Toxin
KHN77_RS20160 (XCY_004033) 4771204..4771764 - 561 WP_104586335.1 hypothetical protein -
KHN77_RS20165 (XCY_004034) 4772462..4774087 + 1626 WP_119129946.1 alpha/beta hydrolase-fold protein -
KHN77_RS20170 (XCY_004035) 4774170..4774571 - 402 WP_126968946.1 DUF2384 domain-containing protein -
KHN77_RS20175 (XCY_004036) 4774876..4775331 + 456 WP_180496823.1 hypothetical protein -
KHN77_RS20180 (XCY_004037) 4775360..4775683 - 324 WP_119129948.1 hypothetical protein -
KHN77_RS20185 (XCY_004038) 4775795..4776040 + 246 WP_115045825.1 helix-turn-helix transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-127)

Antitoxin

Arc-like DNA binding domain

(1-41)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14754.04 Da        Isoelectric Point: 5.6845

>T285348 WP_102582219.1 NZ_HG999363:4770663-4771079 [Xanthomonas euroxanthea]
VILLDTNVISELWRPQPNPKVVAWIDAQAVETLFLSVVTVAELRFGIAVMPEGRKRSTLHARLESDVLPLFNGRLLAFDL
DASHAFATLASKARAAGLTLGRADAYIAATAAAQGLTVATRDTAPFAAMALDVIDPWS

Download         Length: 417 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9103.51 Da        Isoelectric Point: 10.7542

>AT285348 WP_102582218.1 NZ_HG999363:4770412-4770666 [Xanthomonas euroxanthea]
MPSFTVRNIPDEVHRAIRARAALHGRSTEAEIRAILESAAKPADRVKLGSLLVDIGRDAGLTAKQADAFDTLRDKTAIKP
ISLK

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References